Function reference • CoRC

All functions
`CoRC` `CoRC-package`	CoRC: COPASI R Connector.
`addExperiments()`	Add a parameter estimation experiment
`addOptimizationParameter()`	Add an optimization parameter
`addParameterEstimationParameter()`	Add a parameter estimation parameter
`applyInitialState()`	Apply the model's initial state
`autoplot(<copasi_ts>)`	Autoplot method for COPASI timeseries objects.
`biomodels_url()`	Generate a URL to a BioModels model.
`clearCustomKineticFunctions()`	Clear custom functions
`clearExperiments()`	Clear all parameter estimation experiments
`clearOptimizationParameters()`	Clear all optimization parameters
`clearParameterEstimationParameters()`	Clear all parameter estimation parameters
`clearValidations()`	Clear all parameter estimation validation data.
`compileModel()`	Compile the model
`convertToIrreversible()`	Convert the model to irreversible reactions
`defineExperiments()`	Define a parameter estimation experiment
`defineOptimizationParameter()`	Define an optimization parameter
`defineParameterEstimationParameter()`	Define a parameter estimation parameter
`deleteCompartment()`	Delete compartments
`deleteEvent()`	Delete events
`deleteGlobalQuantity()`	Delete global quantities
`deleteKineticFunction()`	Delete a function
`deleteReaction()`	Delete reactions
`deleteSpecies()`	Delete species
`species()` `species_strict()` `quantity()` `quantity_strict()` `compartment()` `compartment_strict()` `reaction()` `reaction_strict()` `parameter()` `parameter_strict()` `event()` `event_strict()` `kinfunction()` `kinfunction_strict()`	Entity finders
`getAreaUnit()`	Get the unit of area
`getCompartmentReferences()`	Get compartment references
`getCompartments()`	Get compartments
`getCurrentModel()`	Get the currently active model
`getEvents()`	Get events
`getGlobalQuantities()`	Get global quantities
`getGlobalQuantityReferences()`	Get global quantity references
`getInitialTime()`	Get the model's initial time
`getInitialValue()`	Calculate the initial value of an expression or reference
`getLengthUnit()`	Get the unit of length
`getLinearNoiseApproximationSettings()` `getLNA()`	Get linear noise approximation settings
`getLinkMatrix()`	Get link matrix
`getLoadedModels()`	Get a list of loaded models
`getMetabolicControlAnalysisSettings()` `getMCA()`	Get metabolic control analysis settings
`getModelName()`	Get the model's name
`getOptimizationSettings()` `getOpt()`	Set optimization settings
`getParameterEstimationSettings()` `getPE()`	Set parameter estimation settings
`getParameterReferences()`	Get reaction parameter references
`getParameters()`	Get reaction parameters
`getQuantityUnit()`	Get the unit of quantity
`getReactionMappings()`	Get reaction parameter mappings
`getReactionReferences()`	Get reaction references
`getReactions()`	Get reactions
`getReducedStoichiometryMatrix()`	Get reduced stoichiometry matrix
`getSpecies()`	Get species
`getSpeciesReferences()`	Get species references
`getSteadyStateSettings()` `getSS()`	Get steady state settings
`getStoichiometryMatrix()`	Get stoichiometry matrix
`getTimeCourseSettings()` `getTC()`	Get time course settings
`getTimeUnit()`	Get the unit of time
`getValidReactionFunctions()`	Get valid function names for reaction
`getValue()`	Calculate the value of an expression or reference
`getVersion()`	Get COPASI version numbers
`getVolumeUnit()`	Get the unit of volume
`loadCombineArchive()`	Load a combine archive
`loadExamples()`	Load example models
`loadModel()`	Load a model
`loadModelFromString()`	Load a model from a string
`loadSBML()`	Load an SBML model
`loadSBMLFromString()`	Load an SBML model from a string
`newCompartment()`	Create a new compartment
`newEvent()`	Create a new event
`newGlobalQuantity()`	Create a new global quantity
`newKineticFunction()`	Create a new kinetic function
`newModel()`	Load an empty model
`newReaction()`	Create a new reaction
`newSpecies()`	Create a new species
`openCopasi()`	Open the model in the COPASI GUI
`runLinearNoiseApproximation()` `runLNA()`	Run linear noise approximation
`runMetabolicControlAnalysis()` `runMCA()`	Run metabolic control analysis
`runOptimization()` `runOpt()`	Run optimization
`runParameterEstimation()` `runPE()`	Run parameter estimation
`runSigmaPoint()` `runSP()`	Run sigma point method
`runSteadyState()` `runSS()`	Run to steady state
`runTimeCourse()` `runTC()`	Run a time course
`saveCombineArchive()`	Save the model as a combine archive
`saveModel()`	Save the model as a .cps file
`saveModelToString()`	Save the model to string
`saveSBML()`	Save the model as a SBML file
`saveSBMLToString()`	Save the model to an SBML string
`setAreaUnit()`	Set the unit of area
`setCompartments()`	Set compartments
`setCurrentModel()`	Set the currently active model
`setEvents()`	Set events
`setGlobalQuantities()`	Set global quantities
`setInitialTime()`	Set the model's initial time
`setLengthUnit()`	Set the unit of length
`setLinearNoiseApproximationSettings()` `setLNA()`	Set linear noise approximation settings
`setMetabolicControlAnalysisSettings()` `setMCA()`	Set metabolic control analysis settings
`setModelName()`	Set a model's name
`setOptimizationSettings()` `setOpt()`	Set optimization settings
`setParameterEstimationSettings()` `setPE()`	Set parameter estimation settings
`setParameters()`	Set reaction parameters
`setQuantityUnit()`	Set the unit of quantity
`setReactionFunction()`	Set a reaction function
`setReactionMappings()`	Set reaction parameter mappings
`setReactions()`	Set reactions
`setSpecies()`	Set species
`setSteadyStateSettings()` `setSS()`	Set steady state settings
`setTimeCourseSettings()` `setTC()`	Set time course settings
`setTimeUnit()`	Set the unit of time
`setVolumeUnit()`	Set the unit of volume
`unloadAllModels()`	Unload all loaded models
`unloadModel()`	Unload a model
`updateInitialState()`	Update the model's initial state from the current state

Reference

All functions